3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12739

Details:

PFam ID : PF12739

PFam Domain Description : ER-Golgi trafficking TRAPP I complex 85 kDa subunit

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 157

Average sequence length: 401.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12739	C4LU45_ENTHI_98_413	75.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12739	C1N9B2_MICPC_175_653	91.0

Sequence based PCA Plot of the family - PF12739 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=129 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay