3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12738

Details:

PFam ID : PF12738

PFam Domain Description : twin BRCT domain

Number of Sequence in 50% Dataset : 185

Number of Sequence in Full Dataset : 619

Average sequence length: 63.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12738	B9A1S1_PHONA_210_629	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12738	E1ZLV3_9CHLO_14_94	100

Sequence based PCA Plot of the family - PF12738 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=72 Length=8
Motif3 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay