3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12737

Details:

PFam ID : PF12737

PFam Domain Description : C-terminal domain of homeodomain 1

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 27

Average sequence length: 389.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12737	B9A1S1_PHONA_210_629	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12737	MAB11_COPCI_261_679	100

Sequence based PCA Plot of the family - PF12737 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=25 Length=8
Motif3 Start=213 Length=8
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay