3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12735

Details:

PFam ID : PF12735

PFam Domain Description : TRAPP trafficking subunit Trs65

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 66

Average sequence length: 286.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12735	D1ZGS4_SORMK_284_665	82.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12735	B5VJB0_YEAS6_1_285	100

Sequence based PCA Plot of the family - PF12735 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay