3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12734

Details:

PFam ID : PF12734

PFam Domain Description : Cysteine-rich TM module stress tolerance

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 152

Average sequence length: 50.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12734	C0EDK1_9CLOT_519_646	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12734	A9US12_MONBE_240_291	96.6

Sequence based PCA Plot of the family - PF12734 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay