3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12733

Details:

PFam ID : PF12733

PFam Domain Description : Cadherin-like beta sandwich domain

Number of Sequence in 50% Dataset : 204

Number of Sequence in Full Dataset : 364

Average sequence length: 93.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12733	C0EDK1_9CLOT_519_646	19.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12733	C1MSQ5_MICPC_785_908	100

Sequence based PCA Plot of the family - PF12733 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay