3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12732

Details:

PFam ID : PF12732

PFam Domain Description : YtxH-like protein

Number of Sequence in 50% Dataset : 231

Number of Sequence in Full Dataset : 503

Average sequence length: 95.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12732	D1C4P7_SPHTD_12_55	85.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12732	C3EHJ1_BACTK_6_100	99.6

Sequence based PCA Plot of the family - PF12732 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=8
Motif2 Start=15 Length=20
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay