3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12729

Details:

PFam ID : PF12729

PFam Domain Description : Four helix bundle sensory module for signal transduction

Number of Sequence in 50% Dataset : 1242

Number of Sequence in Full Dataset : 2067

Average sequence length: 176.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12729	Q55J08_CRYNE_127_946	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12729	Q2BM47_9GAMM_6_182	100

Sequence based PCA Plot of the family - PF12729 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=11
Motif2 Start=23 Length=8
Motif3 Start=14 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay