3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12728

Details:

PFam ID : PF12728

PFam Domain Description : Helix-turn-helix domain

Number of Sequence in 50% Dataset : 598

Number of Sequence in Full Dataset : 2903

Average sequence length: 50.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12728	Q55J08_CRYNE_127_946	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12728	F2JIG0_9FIRM_3_54	100

Sequence based PCA Plot of the family - PF12728 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=8
Motif2 Start=1 Length=18
Motif3 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay