3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12724

Details:

PFam ID : PF12724

PFam Domain Description : NrdI Flavodoxin like

Number of Sequence in 50% Dataset : 234

Number of Sequence in Full Dataset : 614

Average sequence length: 131.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12724	D7CW49_TRURR_8_154	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12724	B9DXI0_CLOK1_4_189	100

Sequence based PCA Plot of the family - PF12724 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=1 Length=20
Motif3 Start=45 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay