3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12722

Details:

PFam ID : PF12722

PFam Domain Description : High-temperature-induced dauer-formation protein

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 159

Average sequence length: 528.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12722	Q6CWB1_KLULA_650_939	63.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12722	YOE7_SCHPO_1_423	99.3

Sequence based PCA Plot of the family - PF12722 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=55 Length=8
Motif4 Start=88 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay