3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12719

Details:

PFam ID : PF12719

PFam Domain Description : Nuclear condensing complex subunits, C-term domain

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 159

Average sequence length: 292.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12719	C4M0I8_ENTHI_428_706	66.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12719	B5RTK2_DEBHA_657_1004	100

Sequence based PCA Plot of the family - PF12719 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=157 Length=8
Motif3 Start=136 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay