3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12717

Details:

PFam ID : PF12717

PFam Domain Description : non-SMC mitotic condensation complex subunit 1

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 230

Average sequence length: 173.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12717	A2ECL6_TRIVA_712_884	60.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12717	Q4N2H9_THEPA_1283_1508	100

Sequence based PCA Plot of the family - PF12717 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=142 Length=8
Motif3 Start=13 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay