3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12714

Details:

PFam ID : PF12714

PFam Domain Description : TILa domain

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 152

Average sequence length: 55.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12714	E9Q9C6_MOUSE_384_441	43.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12714	E9Q9C6_MOUSE_384_441	99.3

Sequence based PCA Plot of the family - PF12714 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=21
Motif2 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay