3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12712

Details:

PFam ID : PF12712

PFam Domain Description : Domain of unknown function (DUF3805)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 16

Average sequence length: 143.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12712	Q4RM26_TETNG_405_493	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12712	C3Q054_9BACE_1_152	100

Sequence based PCA Plot of the family - PF12712 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=72 Length=8
Motif2 Start=31 Length=8
Motif3 Start=90 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay