3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12710

Details:

PFam ID : PF12710

PFam Domain Description : haloacid dehalogenase-like hydrolase

Number of Sequence in 50% Dataset : 803

Number of Sequence in Full Dataset : 3821

Average sequence length: 257.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12710	F2I0N8_9RICK_9_251	98.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12710	B1XMT0_SYNP2_2_109	97.3

Sequence based PCA Plot of the family - PF12710 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=394 Length=8
Motif2 Start=368 Length=8
Motif3 Start=226 Length=8
Motif4 Start=441 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay