3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12709

Details:

PFam ID : PF12709

PFam Domain Description : Central kinetochore-associated

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 48

Average sequence length: 80.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12709	A2C0I4_PROM1_1_96	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12709	Q9HF65_ASHGS_5_91	100

Sequence based PCA Plot of the family - PF12709 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay