3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12706

Details:

PFam ID : PF12706

PFam Domain Description : Beta-lactamase superfamily domain

Number of Sequence in 50% Dataset : 1170

Number of Sequence in Full Dataset : 4637

Average sequence length: 206.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12706	A9V1J1_MONBE_100_421	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12706	A8V2F3_9AQUI_3_96	98.7

Sequence based PCA Plot of the family - PF12706 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=45 Length=8
Motif2 Start=8 Length=8
Motif3 Start=90 Length=11
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay