3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12704

Details:

PFam ID : PF12704

PFam Domain Description : MacB-like periplasmic core domain

Number of Sequence in 50% Dataset : 3633

Number of Sequence in Full Dataset : 8190

Average sequence length: 229.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12704	D4WP74_BACOV_6_149	83.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12704	Q5WK58_BACSK_454_677	96.4

Sequence based PCA Plot of the family - PF12704 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=37 Length=8
Motif2 Start=1 Length=11
Motif3 Start=17 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay