3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12702

Details:

PFam ID : PF12702

PFam Domain Description : Lipocalin-like

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 32

Average sequence length: 86.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12702	B3JI18_9BACE_43_103	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12702	C7PHD8_CHIPD_62_159	96.7

Sequence based PCA Plot of the family - PF12702 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay