3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12700

Details:

PFam ID : PF12700

PFam Domain Description : HlyD family secretion protein

Number of Sequence in 50% Dataset : 2553

Number of Sequence in Full Dataset : 6572

Average sequence length: 299.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12700	A6DSJ6_9BACT_43_467	94.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12700	D5RX28_CLODI_24_199	99.5

Sequence based PCA Plot of the family - PF12700 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=345 Length=8
Motif2 Start=361 Length=11
Motif3 Start=164 Length=8
Motif4 Start=36 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay