3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12699

Details:

PFam ID : PF12699

PFam Domain Description : phiKZ-like phage internal head proteins

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 16

Average sequence length: 298.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12699	B3FJ18_9CAUD_282_582	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12699	B3FJ20_9CAUD_154_462	93.3

Sequence based PCA Plot of the family - PF12699 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay