3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12698

Details:

PFam ID : PF12698

PFam Domain Description : ABC-2 family transporter protein

Number of Sequence in 50% Dataset : 1945

Number of Sequence in Full Dataset : 5196

Average sequence length: 341.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12698	A6VAT3_PSEA7_229_398	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12698	B7G9E6_PHATC_85_630	98.1

Sequence based PCA Plot of the family - PF12698 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=412 Length=8
Motif2 Start=423 Length=8
Motif3 Start=351 Length=8
Motif4 Start=124 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay