3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12696

Details:

PFam ID : PF12696

PFam Domain Description : TraM recognition site of TraD and TraG

Number of Sequence in 50% Dataset : 204

Number of Sequence in Full Dataset : 524

Average sequence length: 118.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12696	A6VAT3_PSEA7_229_398	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12696	E6Q2S5_9ZZZZ_521_665	100

Sequence based PCA Plot of the family - PF12696 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=109 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay