3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12695

Details:

PFam ID : PF12695

PFam Domain Description : Alpha/beta hydrolase family

Number of Sequence in 50% Dataset : 2273

Number of Sequence in Full Dataset : 6486

Average sequence length: 192.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12695	A6VAT3_PSEA7_229_398	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12695	A2DXW0_TRIVA_5_169	99.1

Sequence based PCA Plot of the family - PF12695 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=157 Length=8
Motif3 Start=123 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay