3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12690

Details:

PFam ID : PF12690

PFam Domain Description : Intracellular proteinase inhibitor

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 69

Average sequence length: 81.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12690	B5Y6H1_COPPD_45_121	86.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12690	B9LNE3_HALLT_14_104	100

Sequence based PCA Plot of the family - PF12690 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=21
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay