3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12689

Details:

PFam ID : PF12689

PFam Domain Description : Acid Phosphatase

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 151

Average sequence length: 154.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12689	B7QEF7_IXOSC_1461_1518	92.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12689	B8BRH3_THAPS_28_230	100

Sequence based PCA Plot of the family - PF12689 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay