3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12688

Details:

PFam ID : PF12688

PFam Domain Description : Tetratrico peptide repeat

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 153

Average sequence length: 112.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12688	A7HHP6_ANADF_591_690	29.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12688	C0A254_9BACT_38_160	99.3

Sequence based PCA Plot of the family - PF12688 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=78 Length=8
Motif3 Start=20 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay