3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12682

Details:

PFam ID : PF12682

PFam Domain Description : Flavodoxin domain

Number of Sequence in 50% Dataset : 161

Number of Sequence in Full Dataset : 568

Average sequence length: 148.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12682	D6TK58_9CHLR_11_176	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12682	B2GBT1_LACF3_2_107	100

Sequence based PCA Plot of the family - PF12682 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=110 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay