3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12681

Details:

PFam ID : PF12681

PFam Domain Description : Glyoxalase-like domain

Number of Sequence in 50% Dataset : 1699

Number of Sequence in Full Dataset : 8773

Average sequence length: 112.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12681	D6TK58_9CHLR_11_176	93.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12681	B3PYH5_RHIE6_4_58	99.9

Sequence based PCA Plot of the family - PF12681 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=123 Length=8
Motif4 Start=138 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay