3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12679

Details:

PFam ID : PF12679

PFam Domain Description : ABC-2 family transporter protein

Number of Sequence in 50% Dataset : 610

Number of Sequence in Full Dataset : 1140

Average sequence length: 280.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12679	B8AHA4_ORYSI_83_146	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12679	B8D3Y3_DESK1_4_523	100

Sequence based PCA Plot of the family - PF12679 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=315 Length=8
Motif3 Start=325 Length=8
Motif4 Start=504 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay