3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12677

Details:

PFam ID : PF12677

PFam Domain Description : Domain of unknown function (DUF3797)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 13

Average sequence length: 43.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12677	B3ZFP4_BACCE_1_55	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12677	Q4V110_BACCZ_1_49	100

Sequence based PCA Plot of the family - PF12677 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay