3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12669

Details:

PFam ID : PF12669

PFam Domain Description : Virus attachment protein p12 family

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 169

Average sequence length: 50.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12669	D7V0J7_LISGR_7_50	70.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12669	A7VP41_9CLOT_26_133	96.4

Sequence based PCA Plot of the family - PF12669 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay