3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12667

Details:

PFam ID : PF12667

PFam Domain Description : NigD-like protein

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 126

Average sequence length: 189.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12667	B5CYF7_9BACE_36_255	17.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12667	C6Z303_9BACE_44_237	89

Sequence based PCA Plot of the family - PF12667 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=150 Length=8
Motif3 Start=136 Length=8
Motif4 Start=94 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay