3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12661

Details:

PFam ID : PF12661

PFam Domain Description : Human growth factor-like EGF

Number of Sequence in 50% Dataset : 1207

Number of Sequence in Full Dataset : 1535

Average sequence length: 12.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12661	A5DNW3_PICGU_644_743	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12661	C3Y9U9_BRAFL_2822_2834	92.4

Sequence based PCA Plot of the family - PF12661 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay