3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12658

Details:

PFam ID : PF12658

PFam Domain Description : Telomere capping

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 41

Average sequence length: 127.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12658	A7TJ67_VANPO_1_148	29.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12658	F2SDU7_TRIRU_1_145	95

Sequence based PCA Plot of the family - PF12658 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=2 Length=8
Motif4 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay