3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12657

Details:

PFam ID : PF12657

PFam Domain Description : Transcription factor IIIC subunit delta N-term

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 76

Average sequence length: 155.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12657	E7A0W4_9BASI_32_203	97.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12657	E3L2C5_PUCGT_72_287	100

Sequence based PCA Plot of the family - PF12657 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay