3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12656

Details:

PFam ID : PF12656

PFam Domain Description : DExH-box splicing factor binding site

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 148

Average sequence length: 76.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12656	F2EIF9_HORVD_58_132	72.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12656	B8CB44_THAPS_244_339	100

Sequence based PCA Plot of the family - PF12656 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=35 Length=8
Motif4 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay