3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12655

Details:

PFam ID : PF12655

PFam Domain Description : Domain of unknown function (DUF3787)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 29

Average sequence length: 48.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12655	C6LCZ9_9FIRM_46_255	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12655	A9KIZ0_CLOPH_16_67	100

Sequence based PCA Plot of the family - PF12655 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay