3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12654

Details:

PFam ID : PF12654

PFam Domain Description : Domain of unknown function (DUF3786)

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 107

Average sequence length: 175.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12654	C6LCZ9_9FIRM_46_255	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12654	C6LCZ9_9FIRM_46_255	100

Sequence based PCA Plot of the family - PF12654 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=68 Length=8
Motif4 Start=140 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay