3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12645

Details:

PFam ID : PF12645

PFam Domain Description : Helix-turn-helix domain

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 126

Average sequence length: 59.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12645	E7GUN0_CLOSY_9_64	12

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12645	B6FLN6_9CLOT_12_77	100

Sequence based PCA Plot of the family - PF12645 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=18
Motif2 Start=48 Length=8
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay