3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12643

Details:

PFam ID : PF12643

PFam Domain Description : MazG-like family

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 95

Average sequence length: 93.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12643	C8WV92_ALIAD_32_124	15.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12643	E0Q5U2_9BIFI_62_138	100

Sequence based PCA Plot of the family - PF12643 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=8 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay