3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12642

Details:

PFam ID : PF12642

PFam Domain Description : Conjugative transposon protein TcpC

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 136

Average sequence length: 213.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12642	C2Y3J9_BACCE_7_172	84.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12642	E6I0T4_ENTFA_61_292	99.2

Sequence based PCA Plot of the family - PF12642 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay