3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12641

Details:

PFam ID : PF12641

PFam Domain Description : Flavodoxin

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 175

Average sequence length: 145.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12641	A8SKR9_9FIRM_2_153	90.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12641	D3R038_CLOB3_4_180	100

Sequence based PCA Plot of the family - PF12641 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=1 Length=20
Motif3 Start=163 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay