3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12640

Details:

PFam ID : PF12640

PFam Domain Description : UPF0489 domain

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 91

Average sequence length: 162.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12640	B6G251_9CLOT_77_228	94.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12640	F0VZW9_9STRA_8_210	100

Sequence based PCA Plot of the family - PF12640 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=234 Length=8
Motif3 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay