3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12637

Details:

PFam ID : PF12637

PFam Domain Description : TSCPD domain

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 436

Average sequence length: 89.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12637	C2D407_LACBR_4_79	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12637	C9L855_RUMHA_598_698	98.3

Sequence based PCA Plot of the family - PF12637 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=47 Length=8
Motif3 Start=19 Length=8
Motif4 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay