3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12634

Details:

PFam ID : PF12634

PFam Domain Description : Inheritance of peroxisomes protein 1

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 50

Average sequence length: 132.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12634	Q6BZS6_YARLI_89_207	76.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12634	B3LM92_YEAS1_76_261	93.8

Sequence based PCA Plot of the family - PF12634 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=107 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay