3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12633

Details:

PFam ID : PF12633

PFam Domain Description : Adenylate cyclase NT domain

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 119

Average sequence length: 189.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12633	D5LP89_9ESCH_1_86	89.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12633	F2GAL4_ALTMD_9_219	100

Sequence based PCA Plot of the family - PF12633 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=78 Length=8
Motif3 Start=67 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay