3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12632

Details:

PFam ID : PF12632

PFam Domain Description : Mysoin-binding motif of peroxisomes

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 65

Average sequence length: 225.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12632	D5GJ32_TUBMM_152_439	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12632	D5GJ32_TUBMM_152_439	98.4

Sequence based PCA Plot of the family - PF12632 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=50 Length=8
Motif2 Start=3 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay