3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12631

Details:

PFam ID : PF12631

PFam Domain Description : Catalytic cysteine-containing C-terminus of GTPase, MnmE

Number of Sequence in 50% Dataset : 105

Number of Sequence in Full Dataset : 1098

Average sequence length: 72.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12631	E0TIK9_ZINIC_352_452	98.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12631	E3KVA2_PUCGT_431_531	100

Sequence based PCA Plot of the family - PF12631 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=8
Motif3 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay